Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
araGArabinose import ATP-binding protein AraG. (506 aa)    
Predicted Functional Partners:
yjfF
Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
ytfT
Inner membrane ABC transporter permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
ytfQ
ABC transporter periplasmic-binding protein YtfQ precursor.
 
 0.995
rbsB
D-ribose-binding periplasmic protein precursor.
 
 0.993
mglC
Galactoside transport system permease protein MglC.
 
 
 0.919
alsB
D-allose-binding periplasmic protein precursor.
 
 0.910
xylH_1
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.897
xylH_2
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.893
xylF
D-xylose-binding periplasmic protein precursor.
 
 
 0.884
mglB_12
D-galactose-binding periplasmic protein precursor.
 
 0.859
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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