STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheVChemotaxis protein CheV. (300 aa)    
Predicted Functional Partners:
cheA_1
Chemotaxis protein CheA.
 
 0.997
cheA_2
Chemotaxis protein CheA.
 
 0.997
fliN
Flagellar motor switch protein FliN.
  
 
 0.985
mcpB_18
Methyl-accepting chemotaxis protein McpB.
 
 0.973
trg_2
Methyl-accepting chemotaxis protein III.
 
 0.969
tap_1
Methyl-accepting chemotaxis protein IV.
 
 0.969
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.965
fliM
Flagellar motor switch protein FliM.
  
 
 0.957
flhB_1
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
  
 
 0.955
mcp4_13
Methyl-accepting chemotaxis protein 4.
 
 0.952
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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