STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
malT_3HTH-type transcriptional regulator MalT. (853 aa)    
Predicted Functional Partners:
AQR97164.1
ABC-2 family transporter protein.
 
     0.887
AQR97165.1
ABC-2 family transporter protein.
 
     0.819
drrA_3
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
     0.604
desK
Sensor histidine kinase DesK.
 
   
 0.603
degU_2
Transcriptional regulatory protein DegU.
  
   
 0.598
patB
Cystathionine beta-lyase PatB.
    
   0.564
devR
Transcriptional regulatory protein DevR (DosR).
  
   
 0.555
degU_3
Transcriptional regulatory protein DegU.
  
   
 0.480
AQR97162.1
Hypothetical protein.
       0.444
comP
Sensor histidine kinase ComP.
 
   
 0.407
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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