STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulaRHTH-type transcriptional regulator UlaR. (250 aa)    
Predicted Functional Partners:
lacC
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.802
csdB
4-hydroxyphenylacetate decarboxylase large subunit.
 
 
 0.795
fruA_2
PTS system fructose-specific EIIABC component.
 
  
 0.780
glcR_2
HTH-type transcriptional repressor GlcR.
  
     0.773
glcR_1
HTH-type transcriptional repressor GlcR.
  
     0.723
hpdA
4-hydroxyphenylacetate decarboxylase activating enzyme.
 
  
 0.672
fsaA
Fructose-6-phosphate aldolase 1.
 
  
 0.590
fabG_7
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
  
 0.514
nadK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
   
 
 0.509
licR_1
Putative licABCH operon regulator.
  
  
 0.503
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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