Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR97193.1Major facilitator superfamily protein. (393 aa)    
Predicted Functional Partners:
AQR97192.1
Hypothetical protein.
       0.689
nasF
uroporphyrinogen-III C-methyltransferase.
  
  
 0.606
AQR98121.1
Phage capsid family protein.
   
    0.583
AQR97200.1
Xylose isomerase-like TIM barrel.
  
    0.528
AQR96648.1
Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.514
AQR97305.1
Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.
  
  
 0.514
manX_3
PTS system mannose-specific EIIAB component.
   
  
 0.512
yesS_2
HTH-type transcriptional regulator YesS.
  
     0.497
AQR97201.1
Hypothetical protein.
  
    0.485
AQR96766.1
Xylose isomerase-like TIM barrel.
 
    0.471
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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