STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolE_3Inosose dehydratase. (304 aa)    
Predicted Functional Partners:
ycjS_3
Putative oxidoreductase YcjS.
 
 
 0.864
iolW_3
Scyllo-inositol 2-dehydrogenase.
 
 
 0.855
iolW_1
Scyllo-inositol 2-dehydrogenase.
 
 
 0.738
ycjS_2
Putative oxidoreductase YcjS.
 
 
 0.715
iolW_2
Scyllo-inositol 2-dehydrogenase.
 
 
 0.707
ycjS_1
Putative oxidoreductase YcjS.
 
 
 0.706
AQR96762.1
Trehalose utilization.
 
   
 0.635
iolX
Scyllo-inositol 2-dehydrogenase.
 
 
 0.623
kdgK_5
2-dehydro-3-deoxygluconokinase.
 
 
 0.603
AQR97270.1
Putative endoglucanase.
  
     0.602
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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