STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
licR_3Putative licABCH operon regulator. (655 aa)    
Predicted Functional Partners:
fruA_2
PTS system fructose-specific EIIABC component.
 
 
 0.999
mtlA
PTS system mannitol-specific EIICBA component.
 
 
 0.976
mtlR
Transcriptional regulator MtlR.
 
 
 0.958
manP
PTS system mannose-specific EIIBCA component.
 
 
 0.947
fruA_3
PTS system fructose-specific EIIBC component.
 
 
 0.945
licR_1
Putative licABCH operon regulator.
 
 
0.930
licR_2
Putative licABCH operon regulator.
 
 
0.930
ulaC
Ascorbate-specific phosphotransferase enzyme IIA component.
 
 
 0.913
lacC
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.896
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
  
 0.893
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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