STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
padRTranscriptional regulator PadR-like family protein. (180 aa)    
Predicted Functional Partners:
agrB_1
Accessory protein regulator protein B.
      
 0.631
pta_2
Phosphate acetyltransferase.
      
 0.566
cooS2
Carbon monoxide dehydrogenase 2.
      
 0.555
cooS1
Carbon monoxide dehydrogenase 1.
      
 0.555
AQR94526.1
Hypothetical protein.
  
   
 0.551
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
     
 0.482
yhjX
Putative MFS-type transporter YhjX.
     
 0.468
AQR97218.1
NADH oxidase.
 
    0.462
tetR_3
Tetracycline repressor protein class B from transposon Tn10.
  
   
 0.431
tetR_2
Tetracycline repressor protein class B from transposon Tn10.
  
   
 0.411
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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