Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
padRTranscriptional regulator PadR-like family protein. (180 aa)    
Predicted Functional Partners:
agrB_1
Accessory protein regulator protein B.
      
 0.630
AQR94526.1
Hypothetical protein.
  
   
 0.543
pta_2
Phosphate acetyltransferase.
      
 0.502
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
     
 0.488
cooS2
Carbon monoxide dehydrogenase 2.
      
 0.485
cooS1
Carbon monoxide dehydrogenase 1.
      
 0.485
AQR97218.1
NADH oxidase.
 
    0.468
yhjX
Putative MFS-type transporter YhjX.
       0.467
tetR_3
Tetracycline repressor protein class B from transposon Tn10.
  
   
 0.422
tetR_2
Tetracycline repressor protein class B from transposon Tn10.
  
   
 0.402
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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