STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tetD_3Transposon Tn10 TetD protein. (393 aa)    
Predicted Functional Partners:
adaA_1
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.814
cdhR
HTH-type transcriptional regulator CdhR.
 
 
 
 0.807
rhaS_5
HTH-type transcriptional activator RhaS.
  
     0.761
rhaS_4
HTH-type transcriptional activator RhaS.
 
     0.757
adaA_5
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.754
btr_3
HTH-type transcriptional activator Btr.
  
     0.723
rhaS_6
HTH-type transcriptional activator RhaS.
  
     0.696
xynB_4
Beta-xylosidase.
  
     0.694
xynB_6
Beta-xylosidase.
  
     0.664
btr_1
HTH-type transcriptional activator Btr.
  
     0.654
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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