STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpEPenicillin-binding protein 4*. (373 aa)    
Predicted Functional Partners:
AQR97233.1
Hypothetical protein.
     
 0.763
AQR97232.1
Peptidase family U32.
     
 0.718
grsB
Gramicidin S synthase 2.
 
  
 0.649
racX_1
Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family.
 
  
 0.583
racX_2
Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family.
 
  
 0.581
tycC
Tyrocidine synthase 3; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.572
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
  
 0.547
mepH_2
Murein DD-endopeptidase MepH precursor.
  
 
 0.536
iap_1
Putative endopeptidase p60 precursor.
  
 
 0.535
mepH_1
Murein DD-endopeptidase MepH precursor.
  
 
 0.535
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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