STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
yusVPutative siderophore transport system ATP-binding protein YusV. (268 aa)    
Predicted Functional Partners:
yfiZ
Putative siderophore transport system permease protein YfiZ precursor; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.999
yfiY
Putative siderophore-binding lipoprotein YfiY precursor.
 
 0.998
yfhA
Putative siderophore transport system permease protein YfhA; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.997
hmuU
Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.975
AQR95490.1
Putative ABC transporter permease protein.
 
 0.964
yclQ
Putative ABC transporter solute-binding protein YclQ precursor.
 
 0.939
btuF
Vitamin B12-binding protein.
 
 0.869
AQR93253.1
Hypothetical protein.
  
 0.835
grsB
Gramicidin S synthase 2.
  
  
 0.759
dhbF
Dimodular nonribosomal peptide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.590
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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