STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97245.1Putative esterase. (245 aa)    
Predicted Functional Partners:
grsB
Gramicidin S synthase 2.
 
  
 0.923
btr_3
HTH-type transcriptional activator Btr.
  
  
 0.816
lgrD
Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.708
mbtB
Phenyloxazoline synthase MbtB.
 
  
 0.697
dhbF
Dimodular nonribosomal peptide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.675
focA
Putative formate transporter 1.
       0.675
yfiZ
Putative siderophore transport system permease protein YfiZ precursor; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.665
yclQ
Putative ABC transporter solute-binding protein YclQ precursor.
 
  
 0.643
fhuC
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
  
  
 0.631
hmuU
Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.618
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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