STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
graS_2Sensor histidine kinase GraS. (339 aa)    
Predicted Functional Partners:
graR_2
Response regulator protein GraR.
 0.974
yxdM
ABC transporter permease protein YxdM.
 
  
 0.916
graR_1
Response regulator protein GraR.
 0.891
bceA
Bacitracin export ATP-binding protein BceA.
 
  
 0.888
bceB
Bacitracin export permease protein BceB.
 
  
 0.851
barA_2
Signal transduction histidine-protein kinase BarA.
 
 0.830
yxdL
ABC transporter ATP-binding protein YxdL.
 
  
 0.797
senX3
Signal-transduction histidine kinase senX3.
 
 
0.753
zraS_2
Sensor protein ZraS.
 
 0.735
zraS_4
Sensor protein ZraS.
 
 0.731
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.