STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxdMABC transporter permease protein YxdM. (672 aa)    
Predicted Functional Partners:
bceA
Bacitracin export ATP-binding protein BceA.
 
 0.994
yxdL
ABC transporter ATP-binding protein YxdL.
 
 0.975
graS_2
Sensor histidine kinase GraS.
 
 
 
 0.952
graS_1
Sensor histidine kinase GraS.
 
 
 
 0.916
macB_3
Macrolide export ATP-binding/permease protein MacB.
  
 0.875
graR_2
Response regulator protein GraR.
 
   
 0.816
AQR93453.1
Putative ABC transporter ATP-binding protein.
 
 0.815
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
  
 0.798
macB_5
Macrolide export ATP-binding/permease protein MacB.
  
 0.798
yxlF_3
Putative ABC transporter ATP-binding protein YxlF.
  
  
 0.788
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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