STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bceABacitracin export ATP-binding protein BceA. (255 aa)    
Predicted Functional Partners:
yxdM
ABC transporter permease protein YxdM.
 
 0.994
bceB
Bacitracin export permease protein BceB.
 
 0.975
graS_2
Sensor histidine kinase GraS.
 
 
 0.952
graS_1
Sensor histidine kinase GraS.
 
 
 0.914
macB_1
Macrolide export ATP-binding/permease protein MacB.
 0.871
yxlF_3
Putative ABC transporter ATP-binding protein YxlF.
 
 
0.852
macB_4
Macrolide export ATP-binding/permease protein MacB.
 0.830
AQR97256.1
Hypothetical protein.
  
    0.784
AQR93454.1
FtsX-like permease family protein.
 
 0.781
ytrF
ABC transporter permease YtrF precursor.
 
 0.777
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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