STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmpB3-hexulose-6-phosphate isomerase. (251 aa)    
Predicted Functional Partners:
malH
Maltose-6'-phosphate glucosidase MalH.
 
  
 0.678
glvR_1
HTH-type transcriptional regulator GlvR.
  
     0.667
pagL
Phospho-alpha-glucosidase PagL.
 
  
 0.645
licH
Putative 6-phospho-beta-glucosidase.
 
  
 0.621
murR_1
HTH-type transcriptional regulator MurR.
  
     0.583
AQR95756.1
Hypothetical protein.
  
    0.464
nagB
Glucosamine-6-phosphate deaminase 1; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
     
 0.460
AQR96958.1
Flagellar assembly protein H.
  
     0.455
malP_2
PTS system maltose-specific EIICB component.
 
  
 0.444
AQR93057.1
Putative RNA polymerase sigma factor SigI.
  
     0.439
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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