STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97270.1Putative endoglucanase. (536 aa)    
Predicted Functional Partners:
AQR97271.1
Hypothetical protein.
 
     0.850
licC_7
Lichenan permease IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
     
 0.697
AQR93729.1
Hypothetical protein.
   
 
 0.648
ramA2
Bacterial alpha-L-rhamnosidase.
 
     0.622
iolE_1
Inosose dehydratase.
  
     0.605
iolE_3
Inosose dehydratase.
  
     0.602
iolE_2
Inosose dehydratase.
  
     0.599
AQR96762.1
Trehalose utilization.
  
     0.556
AQR95413.1
Neutral/alkaline non-lysosomal ceramidase.
  
     0.493
AQR97274.1
Hypothetical protein.
 
     0.491
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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