STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97274.1Hypothetical protein. (474 aa)    
Predicted Functional Partners:
AQR97273.1
Putative endoglucanase.
 
     0.855
dxs_3
1-deoxy-D-xylulose-5-phosphate synthase.
 
    0.853
fucK
L-fuculokinase.
 
 
 0.841
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
  
 0.792
xylB_1
Xylulose kinase.
 
 
 0.790
rhaB
Rhamnulokinase.
 
 
 0.784
tkt_4
Transketolase.
 
    0.772
AQR97279.1
Putative endoglucanase.
 
     0.765
glpK_3
Glycerol kinase.
 
  
  0.748
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
   
 0.738
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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