STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97287.1Putative response regulatory protein. (262 aa)    
Predicted Functional Partners:
AQR97288.1
Putative sensor-like histidine kinase.
 
 
 0.974
yehU_4
Sensor histidine kinase YehU.
 
 
 0.902
ypdA_4
Sensor histidine kinase YpdA.
 
 
 0.893
yehU_3
Sensor histidine kinase YehU.
 
 
 0.886
AQR93680.1
Putative sensor-like histidine kinase.
 
 
 0.875
AQR92993.1
Putative sensor-like histidine kinase.
 
 
 0.860
yehU_2
Sensor histidine kinase YehU.
 
 
 0.860
AQR98183.1
Putative sensor-like histidine kinase.
 
 
 0.854
ypdA_1
Sensor histidine kinase YpdA.
 
 
 0.844
ypdA_5
Sensor histidine kinase YpdA.
 
 
 0.839
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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