STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
melR_4Melibiose operon regulatory protein. (329 aa)    
Predicted Functional Partners:
AQR97289.1
Glycosyl hydrolases family 2, sugar binding domain.
 
  
 0.732
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
  
 0.632
rhaB
Rhamnulokinase.
 
   
 0.613
araC_2
Arabinose operon regulatory protein.
  
     0.609
adaA_3
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.603
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.597
rhaS_4
HTH-type transcriptional activator RhaS.
  
     0.590
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
   
 0.557
AQR95018.1
Hypothetical protein.
  
    0.537
soxS
Regulatory protein SoxS.
  
     0.518
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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