Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR97292.1Polysaccharide deacetylase. (265 aa)    
Predicted Functional Partners:
lipO
Lipoprotein LipO precursor.
 
     0.693
AQR97302.1
Hypothetical protein.
 
     0.687
AQR96739.1
Hypothetical protein.
 
     0.671
AQR96339.1
Hypothetical protein.
 
 
 0.599
xynB_9
Beta-xylosidase.
  
  
  0.568
ypdA_3
Sensor histidine kinase YpdA.
 
     0.554
AQR97297.1
Non-reducing end alpha-L-arabinofuranosidase BoGH43B precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.538
AQR97295.1
Putative response regulatory protein.
 
     0.534
arnT
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
 
 0.519
AQR96062.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
 
 0.519
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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