STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sugBTrehalose transport system permease protein SugB. (284 aa)    
Predicted Functional Partners:
araP_3
L-arabinose transport system permease protein AraP.
 
 0.996
msmE_1
Multiple sugar-binding protein precursor.
 
 0.992
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.989
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.989
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 0.988
araP_4
L-arabinose transport system permease protein AraP.
 
 0.985
araP_5
L-arabinose transport system permease protein AraP.
 
 0.984
lacF_4
Lactose transport system permease protein LacF.
 
 0.984
ycjO_1
Inner membrane ABC transporter permease protein YcjO.
 
 0.958
msmE_2
Multiple sugar-binding protein precursor.
 
 0.952
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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