STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutR_2HTH-type transcriptional regulator LutR. (223 aa)    
Predicted Functional Partners:
mtlK_1
Mannitol 2-dehydrogenase.
 
   
 0.710
uxuA_3
Mannonate dehydratase.
 
   
 0.698
lutR_3
HTH-type transcriptional regulator LutR.
 
  
 0.659
lutR_1
HTH-type transcriptional regulator LutR.
 
  
 0.654
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.597
allR
HTH-type transcriptional repressor AllR.
  
  
 0.595
kdgR
Transcriptional regulator KdgR.
  
  
 0.590
mtlK_2
Mannitol 2-dehydrogenase.
 
   
 0.581
yjmB_5
Putative symporter YjmB.
 
   
 0.565
bmr3_2
Multidrug resistance protein 3.
 
  
 0.510
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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