Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lcfB_2long-chain-fatty-acid--CoA ligase. (525 aa)    
Predicted Functional Partners:
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 0.946
AQR96122.1
Hypothetical protein.
  
 0.936
grsB
Gramicidin S synthase 2.
  
 
 0.900
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
 
0.879
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 0.854
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 0.854
mmgC
acyl-CoA dehydrogenase.
  
 
 0.828
mbtB
Phenyloxazoline synthase MbtB.
  
 
 0.804
AQR97917.1
long-chain-fatty-acid--AMP ligase FadD29.
 
0.791
echA8
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.776
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.