STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97350.1Transcriptional activator FtrA. (281 aa)    
Predicted Functional Partners:
AQR95962.1
Transcriptional activator FtrA.
 
 
 0.820
yabJ_2
2-iminobutanoate/2-iminopropanoate deaminase.
 
   
 0.597
folA_2
Dihydrofolate reductase.
 
    0.577
AQR96505.1
HTH domain protein.
  
     0.576
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.567
rpoS
RNA polymerase sigma factor RpoS; Belongs to the sigma-70 factor family.
   
 
 0.567
qorB_2
Quinone oxidoreductase 2.
 
    0.559
AQR96016.1
HTH domain protein.
  
     0.556
melR_3
Melibiose operon regulatory protein.
 
 
 0.547
bdhA
NADH-dependent butanol dehydrogenase A.
  
    0.540
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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