STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alaAlanine dehydrogenase. (378 aa)    
Predicted Functional Partners:
hcnC
Hydrogen cyanide synthase subunit HcnC precursor.
 
 
 0.918
hcnA
Hydrogen cyanide synthase subunit HcnA.
 
     0.876
hcnB_2
Hydrogen cyanide synthase subunit HcnB.
 
     0.844
hcnB_3
Hydrogen cyanide synthase subunit HcnB.
 
     0.837
argF_1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
 0.694
argF_2
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
 0.658
yabJ_2
2-iminobutanoate/2-iminopropanoate deaminase.
 
  
 0.527
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
  
 0.522
grsB
Gramicidin S synthase 2.
     
 0.479
tdcB
L-threonine dehydratase catabolic TdcB.
  
  
 0.477
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.