STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcbR_3HTH-type transcriptional regulator McbR. (223 aa)    
Predicted Functional Partners:
mtlK_2
Mannitol 2-dehydrogenase.
 
   
 0.709
uxuA_4
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.704
lutR_3
HTH-type transcriptional regulator LutR.
 
  
 0.679
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.601
allR
HTH-type transcriptional repressor AllR.
  
  
 0.587
kdgR
Transcriptional regulator KdgR.
  
  
 0.582
mtlK_1
Mannitol 2-dehydrogenase.
 
   
 0.579
bmr3_2
Multidrug resistance protein 3.
 
  
 0.509
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
   
   0.498
uxuA_2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.495
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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