Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR97396.1Helix-turn-helix domain protein. (272 aa)    
Predicted Functional Partners:
AQR97397.1
Putative transporter.
 
   
 0.635
AQR95913.1
Hypothetical protein.
 
 
 0.567
AQR96674.1
Hypothetical protein.
  
     0.562
adc
Acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
  
     0.529
AQR97395.1
Hypothetical protein.
       0.508
AQR94467.1
Alpha/beta hydrolase family protein.
  
    0.482
AQR96721.1
Major facilitator superfamily protein.
  
    0.478
AQR95665.1
Bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase.
 
 
 0.459
AQR98075.1
Fluoroacetate dehalogenase.
  
    0.453
pheA
P-protein.
    
 0.448
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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