STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanYBD-alanyl-D-alanine carboxypeptidase. (228 aa)    
Predicted Functional Partners:
ponA
Penicillin-binding protein 1A/1B.
     
 0.917
dacF_2
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
    
 0.914
dacB_1
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
     
 0.911
dacB_2
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
     
 0.911
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.816
phoR_10
Alkaline phosphatase synthesis sensor protein PhoR.
       0.766
srrA_7
Transcriptional regulatory protein SrrA.
     
 0.746
vanT
Serine/alanine racemase.
 
   
 0.709
cphA
Cyanophycin synthetase; Belongs to the MurCDEF family.
    
 0.650
ykfA_1
Putative murein peptide carboxypeptidase.
     
 0.641
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: medium (74%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.