Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
skfE_2SkfA peptide export ATP-binding protein SkfE. (236 aa)    
Predicted Functional Partners:
AQR93184.1
ABC-2 family transporter protein.
 
 0.804
ssuB_2
Aliphatic sulfonates import ATP-binding protein SsuB.
  
  
  0.778
AQR94439.1
ABC-2 family transporter protein.
  
 0.778
ytrE
ABC transporter ATP-binding protein YtrE.
  
 
 0.772
AQR93453.1
Putative ABC transporter ATP-binding protein.
  
 
 0.740
AQR94169.1
ABC-2 family transporter protein.
  
 0.703
ycdX_2
Putative phosphatase YcdX.
       0.671
ybhR
Inner membrane transport permease YbhR.
 
 
 0.644
artM_1
Arginine transport ATP-binding protein ArtM.
  
 
 0.638
glnQ_2
Glutamine transport ATP-binding protein GlnQ.
  
  
  0.603
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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