STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allRHTH-type transcriptional repressor AllR. (263 aa)    
Predicted Functional Partners:
kipI
Kinase A inhibitor.
  
  
 0.809
kipA
KipI antagonist.
  
  
 0.805
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
   
 0.705
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.638
AQR96451.1
Hypothetical protein; Belongs to the D-glutamate cyclase family.
  
  
 0.635
lutR_3
HTH-type transcriptional regulator LutR.
 
  
 0.621
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.609
lutR_2
HTH-type transcriptional regulator LutR.
  
  
 0.605
mcbR_2
HTH-type transcriptional regulator McbR.
  
  
 0.603
hutI
Imidazolonepropionase.
    
 0.598
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.