STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97454.1ABC-2 family transporter protein. (264 aa)    
Predicted Functional Partners:
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
 
 
 0.932
AQR97456.1
Transcriptional repressor DicA.
     
 0.806
AQR94487.1
Helix-turn-helix domain protein.
  
     0.627
AQR97458.1
Cupin domain protein.
 
     0.595
AQR94488.1
Hypothetical protein.
 
     0.548
AQR93790.1
Hypothetical protein; Copper amine oxidase N-terminal domain.
  
   
 0.528
AQR95018.1
Hypothetical protein.
  
     0.520
AQR93283.1
Hypothetical protein.
  
   
 0.519
AQR94593.1
SNARE associated golgi protein.
  
   
 0.518
AQR95664.1
Hypothetical protein.
  
   
 0.514
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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