Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybhF_2Putative ABC transporter ATP-binding protein YbhF. (302 aa)    
Predicted Functional Partners:
AQR97454.1
ABC-2 family transporter protein.
 
 
 0.932
AQR97456.1
Transcriptional repressor DicA.
     
 0.845
AQR94439.1
ABC-2 family transporter protein.
  
 0.778
AQR93184.1
ABC-2 family transporter protein.
  
 0.754
AQR94169.1
ABC-2 family transporter protein.
  
 0.690
AQR97164.1
ABC-2 family transporter protein.
 
 
 0.639
ybhR
Inner membrane transport permease YbhR.
 
 
 0.639
AQR93228.1
ABC-2 family transporter protein.
  
 
 0.591
AQR93229.1
ABC-2 family transporter protein.
  
 
 0.591
AQR94750.1
ABC-2 type transporter.
  
 
 0.591
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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