Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR97458.1Cupin domain protein. (102 aa)    
Predicted Functional Partners:
AQR98099.1
N-acetylmuramoyl-L-alanine amidase.
 
     0.667
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.640
AQR94487.1
Helix-turn-helix domain protein.
  
     0.635
AQR97454.1
ABC-2 family transporter protein.
 
     0.595
AQR97753.1
Acetyltransferase (GNAT) family protein.
  
 
 0.583
rmlD_2
dTDP-4-dehydrorhamnose reductase.
  
  
 0.568
AQR97459.1
Hypothetical protein.
       0.565
AQR94593.1
SNARE associated golgi protein.
 
     0.558
gmd
GDP-mannose 4,6-dehydratase.
  
 
 0.520
yybR_6
Putative HTH-type transcriptional regulator YybR.
       0.503
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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