Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydiF_3Acetate CoA-transferase YdiF; Belongs to the 3-oxoacid CoA-transferase family. (527 aa)    
Predicted Functional Partners:
acdA_2
acyl-CoA dehydrogenase.
  
 
 0.944
acdA_3
acyl-CoA dehydrogenase.
  
 
 0.944
pta_1
Phosphate acetyltransferase.
     
 0.933
pta_3
Phosphate acetyltransferase.
     
 0.933
adc
Acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
     
 0.915
adhE_5
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.912
atoD_1
Acetate CoA-transferase subunit alpha.
  
  
0.911
ctfB_1
Butyrate--acetoacetate CoA-transferase subunit B.
     
 0.907
ctfB_2
Butyrate--acetoacetate CoA-transferase subunit B.
     
0.907
ctfB_3
Butyrate--acetoacetate CoA-transferase subunit B.
     
 0.907
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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