STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97482.1Hypothetical protein; Anaerobic sulfatase-maturating enzyme homolog YdeM. (478 aa)    
Predicted Functional Partners:
AQR97481.1
Hypothetical protein.
 
     0.936
AQR94300.1
Hypothetical protein.
 
 
 
 0.773
msbA2
Putative ABC transporter ATP-binding protein.
       0.773
AQR97480.1
Hypothetical protein.
       0.737
ramA2
Bacterial alpha-L-rhamnosidase.
  
 
 0.603
AQR97011.1
Sulfatase.
  
 
 0.603
epr_2
Minor extracellular protease Epr precursor.
 
     0.597
AQR97479.1
Hypothetical protein.
       0.562
yihX
alpha-D-glucose-1-phosphate phosphatase YihX.
   
    0.424
ubiG_1
Ubiquinone biosynthesis O-methyltransferase.
   
    0.420
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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