Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
crtNDehydrosqualene desaturase. (505 aa)    
Predicted Functional Partners:
hcr
NADH oxidoreductase hcr.
  
 0.898
AQR96122.1
Hypothetical protein.
 
   
 0.814
echA8
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.683
mdlD
NAD(P)-dependent benzaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.651
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
    
 0.628
adhE_3
Aldehyde-alcohol dehydrogenase.
  
 
 0.607
adhE_5
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.607
pdhC
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.
    
 0.597
bmrR_5
Multidrug-efflux transporter 1 regulator.
     
 0.593
gbsA
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.583
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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