Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycdT_2Putative diguanylate cyclase YcdT. (1754 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
 0.865
cph2_2
Phytochrome-like protein cph2.
 
  
0.847
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.842
cph2_1
Phytochrome-like protein cph2.
 
  
 0.783
spoIIAB_1
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 
 0.762
ycdT_1
Putative diguanylate cyclase YcdT.
 
  
0.762
spoIIAB_2
Anti-sigma F factor.
  
 
 0.762
chlD
Hypothetical protein.
 
    0.758
rpfC_2
Sensory/regulatory protein RpfC.
 
 
 0.756
rpfC_1
Sensory/regulatory protein RpfC.
 
 
 0.754
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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