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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpPPutative tryptophan transport protein. (173 aa)    
Predicted Functional Partners:
pabA_2
Aminodeoxychorismate synthase component 2.
   
  
 0.608
AQR94351.1
Hypothetical protein.
  
     0.540
AQR93166.1
Hypothetical protein.
  
     0.521
AQR95119.1
Hypothetical protein.
  
     0.515
pabA_1
Aminodeoxychorismate/anthranilate synthase component 2.
   
  
 0.507
AQR95718.1
5' nucleotidase, deoxy (pyrimidine), cytosolic type C protein; Belongs to the 5'(3')-deoxyribonucleotidase family.
  
     0.486
murJ
Putative peptidoglycan biosynthesis protein MurJ; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
  
     0.441
AQR93381.1
Hypothetical protein.
  
     0.422
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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