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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhRInner membrane transport permease YbhR. (338 aa)    
Predicted Functional Partners:
ybhF_3
Putative ABC transporter ATP-binding protein YbhF.
 
 0.983
bm3R1_2
HTH-type transcriptional repressor Bm3R1.
 
     0.949
AQR97520.1
Putative efflux pump membrane fusion protein.
  
  
 0.668
yxlF_1
Putative ABC transporter ATP-binding protein YxlF.
 
 
 0.657
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 0.656
drrA_3
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 0.645
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
 
 0.633
ytrB_1
ABC transporter ATP-binding protein YtrB.
 
 
 0.631
yxlF_2
Putative ABC transporter ATP-binding protein YxlF.
 
 
 0.620
skfE_2
SkfA peptide export ATP-binding protein SkfE.
 
 
 0.607
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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