STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bm3R1_2HTH-type transcriptional repressor Bm3R1. (221 aa)    
Predicted Functional Partners:
ybhR
Inner membrane transport permease YbhR.
 
     0.949
ybhF_3
Putative ABC transporter ATP-binding protein YbhF.
 
   
 0.907
fadR_3
Fatty acid metabolism regulator protein.
  
     0.681
AQR97520.1
Putative efflux pump membrane fusion protein.
     
 0.642
yvdT
Putative HTH-type transcriptional regulator YvdT.
  
     0.493
fadR_1
Fatty acid metabolism regulator protein.
  
     0.473
AQR94440.1
Bacterial regulatory protein, tetR family.
  
     0.469
AQR97516.1
Peptidase family S58.
       0.428
AQR95137.1
Hypothetical protein.
   
    0.426
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.418
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.