Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cggRCentral glycolytic protein regulator. (349 aa)    
Predicted Functional Partners:
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.888
rpoN1
RNA polymerase sigma-54 factor 1.
 
   
 0.680
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.672
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.580
ccpN
Transcriptional repressor CcpN.
 
   
 0.558
purR_1
Pur operon repressor.
  
   
 0.547
citD_1
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
  
 
 0.516
citD_2
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
  
 
 0.516
citE_1
Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.508
citE_2
Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.508
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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