STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhbHStress response UPF0229 protein YhbH; Belongs to the UPF0229 family. (390 aa)    
Predicted Functional Partners:
spoVR
SpoVR family protein.
 
  
 0.996
prkA
PrkA AAA domain protein.
 
  
 0.996
cotS
Spore coat protein S.
  
  
 0.694
AQR97567.1
Hypothetical protein.
       0.676
yabG
Sporulation-specific protease YabG.
  
   
 0.477
spoIIIAG
SpoIIIAH-like protein.
   
  
 0.430
AQR93189.1
Y_Y_Y domain protein.
   
    0.426
ssbB
Single-stranded DNA-binding protein B.
   
    0.426
AQR92790.1
Hypothetical protein.
  
     0.408
AQR93500.1
Hypothetical protein.
   
    0.408
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.