Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prkAPrkA AAA domain protein. (642 aa)    
Predicted Functional Partners:
spoVR
SpoVR family protein.
 
  
 0.996
yhbH
Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family.
 
  
 0.996
glgA_2
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.759
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
   
  
 0.717
AQR97567.1
Hypothetical protein.
       0.656
spoIIID
Stage III sporulation protein D.
   
    0.548
spoIIIAB
Stage III sporulation protein SpoAB.
  
    0.538
cotJB
CotJB protein.
   
    0.467
AQR93500.1
Hypothetical protein.
   
  
 0.462
AQR93516.1
LysM domain/BON superfamily protein.
   
  
 0.462
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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