STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97578.1Putative ABC transporter ATP-binding protein. (617 aa)    
Predicted Functional Partners:
AQR97577.1
Putative ABC transporter ATP-binding protein.
 
   
0.849
emrA_2
Multidrug export protein EmrA.
     
 0.642
lagD
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
 
0.623
grsB
Gramicidin S synthase 2.
  
  
 0.559
mdtN_4
Multidrug resistance protein MdtN; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.554
AQR96122.1
Hypothetical protein.
  
 
 0.525
AQR97576.1
DNA-binding transcriptional repressor AcrR.
       0.509
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
  
0.503
artM_3
Arginine transport ATP-binding protein ArtM.
 
     
0.500
cydD
ATP-binding/permease protein CydD.
 
 
 
0.451
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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