Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR97583.1Hypothetical protein. (326 aa)    
Predicted Functional Partners:
sfrB_2
NADPH-Fe(3+) oxidoreductase subunit beta.
 
     0.796
hypA_1
Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
     0.788
AQR97584.1
Hypothetical protein.
 
     0.707
hypB_1
Hydrogenase isoenzymes nickel incorporation protein HypB.
 
     0.609
AQR94593.1
SNARE associated golgi protein.
  
     0.584
rbn_2
Ribonuclease BN.
  
     0.505
AQR94487.1
Helix-turn-helix domain protein.
  
     0.469
smc_1
Chromosome partition protein Smc.
  
     0.414
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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