Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR97584.1Hypothetical protein. (188 aa)    
Predicted Functional Partners:
AQR97583.1
Hypothetical protein.
 
     0.707
spoT
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase.
     
 0.591
AQR97956.1
Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon.
  
     0.536
AQR97586.1
Hypothetical protein.
       0.535
AQR94694.1
DNA-binding transcriptional repressor FabR.
  
     0.517
AQR94526.1
Hypothetical protein.
  
    0.480
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.446
AQR97587.1
YmaF family protein.
 
     0.424
AQR94721.1
Hypothetical protein.
  
     0.423
AQR95678.1
Hypothetical protein.
  
     0.419
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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