STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97586.1Hypothetical protein. (95 aa)    
Predicted Functional Partners:
spoT
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase.
       0.701
dtpT
Di-/tripeptide transporter.
   
  
 0.601
folA_1
Dihydrofolate reductase.
 
    0.584
folA_2
Dihydrofolate reductase.
 
    0.580
bdhA
NADH-dependent butanol dehydrogenase A.
   
  
 0.538
rpiA_1
Ribose-5-phosphate isomerase A.
 
    0.535
AQR97584.1
Hypothetical protein.
       0.535
AQR95667.1
Isochorismatase family protein.
 
    0.515
AQR96580.1
3-demethylubiquinone-9 3-methyltransferase.
 
    0.502
azoB
NAD(P)H azoreductase.
  
    0.474
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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