Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR97587.1YmaF family protein. (131 aa)    
Predicted Functional Partners:
AQR97588.1
Hypothetical protein.
 
     0.656
spoT
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase.
 
     0.474
AQR98105.1
Hypothetical protein.
  
     0.458
AQR95576.1
Hypothetical protein.
  
     0.438
AQR97586.1
Hypothetical protein.
       0.435
AQR95710.1
Transposase.
  
     0.433
AQR97584.1
Hypothetical protein.
 
     0.424
AQR93521.1
Hypothetical protein.
  
     0.420
AQR96470.1
Hypothetical protein.
  
     0.419
AQR95989.1
Membrane protein of unknown function.
  
     0.415
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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