STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comEAComE operon protein 1. (235 aa)    
Predicted Functional Partners:
AQR93345.1
Hypothetical protein.
   
  
 0.788
epsF_2
Type II secretion system protein F.
  
  
 0.747
epsF_3
Type II secretion system protein F.
  
  
 0.747
gspE
Putative type II secretion system protein E.
  
  
 0.730
xpsE
Type II secretion system protein E.
  
  
 0.730
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
   
  
 0.725
dacB_2
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
     
 0.692
AQR93633.1
ComEC family competence protein.
  
  
 0.646
AQR97606.1
Hypothetical protein.
       0.616
fimA
Fimbrial protein precursor.
  
  
 0.612
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.